{"id":1019,"date":"2018-02-20T14:21:54","date_gmt":"2018-02-20T14:21:54","guid":{"rendered":"http:\/\/127.0.0.1\/rcm\/bhi\/popular-tools\/"},"modified":"2018-02-20T14:21:54","modified_gmt":"2018-02-20T14:21:54","slug":"popular-tools","status":"publish","type":"page","link":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/popular-tools\/","title":{"rendered":"Most popular Bioinformatics and Health Informatics tools used in Biomedical Research"},"content":{"rendered":"

\t\t\t\t[vc_row][vc_column width=”1\/4″]

Microarray Analysis<\/h3><\/div> <\/div> <\/div>
Processing
\nClustering
\nStatistical Analysis
\nGene functional Annotation<\/div> <\/div> <\/div> [\/vc_column][vc_column width=”1\/4″]

Next Gen Sequencing<\/h3><\/div> <\/div> <\/div>
TopHat\/Cufflinks
\nWhole Genome\/Transcriptome Assembly
\nGenome Annotation
\nDESeq
\nEdgeR<\/div> <\/div> <\/div> [\/vc_column][vc_column width=”1\/4″]

Pathway Analysis<\/h3><\/div> <\/div> <\/div>
Ingenuity Pathways Analysis
\nKEGG
\nReactome
\nBioGRID
\nSTRING<\/div> <\/div> <\/div> [\/vc_column][vc_column width=”1\/4″][vc_column_text]<\/p>\n

Services<\/a><\/h3>\n

[\/vc_column_text][vc_column_text]<\/p>\n

Bioinformatics and Health Informatics services can be provided at:<\/strong><\/p>\n

\"\"<\/a><\/p>\n

[\/vc_column_text][vc_separator][\/vc_column][\/vc_row][vc_row][vc_column width=”1\/4″]

Protein modelling and Docking Analysis<\/h3><\/div> <\/div> <\/div>
Databases<\/strong><\/p>\n

PDB
\nUniprot
\nPhyre2
\nI-TASSER
\nMTI-openscreen
\nISTAR-idock<\/p>\n

Modelling Softwares<\/strong><\/p>\n

SWISS-MODEL
\nI-TASSER
\nPhyre2 Server<\/p>\n

Structure Refinement<\/strong><\/p>\n

ModRefiner
\nRefiner-3D<\/p>\n

Protein-Ligand Docking<\/strong><\/p>\n

MTI-openscreen
\nISTAR-idock<\/p>\n

PPI-Docking<\/strong><\/p>\n

HADDOCK
\nCLUSPRO
\nPATCHDOCK\/FireDOCK<\/div> <\/div> <\/div> [\/vc_column][vc_column width=”1\/4″]

Genetic Variation<\/h3><\/div> <\/div> <\/div>
Softwares<\/strong><\/p>\n

BWA
\nNovoAlign
\nSAMTools
\nGenome Analysis ToolKit<\/p>\n

Variant Annotation Databases<\/strong><\/p>\n

dbSNP
\nPolyPhen<\/div> <\/div> <\/div> [\/vc_column][vc_column width=”1\/4″]

Sequence Analysis<\/h3><\/div> <\/div> <\/div>
Alignment Software<\/strong><\/p>\n

BLAST
\nMUSCLE
\nMAFFT
\nT-COFFEE
\nClustal<\/p>\n

Databases<\/strong><\/p>\n

NCBI Entrez
\nEnsembl
\nUniprot<\/div> <\/div> <\/div> [\/vc_column][vc_column width=”1\/4″][vc_column_text]<\/p>\n

HSLS MolBio Licensed Tools: Resource Menu<\/h3>\n

HSLS MolBio Licensed Tools<\/a>[\/vc_column_text][\/vc_column][\/vc_row][vc_column width=”1\/6″][\/vc_column]\t\t<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"

[vc_row][vc_column width=”1\/4″][\/vc_column][vc_column width=”1\/4″][\/vc_column][vc_column width=”1\/4″][\/vc_column][vc_column width=”1\/4″][vc_column_text] Services [\/vc_column_text][vc_column_text] Bioinformatics and Health Informatics services can be provided at: [\/vc_column_text][vc_separator][\/vc_column][\/vc_row][vc_row][vc_column width=”1\/4″][\/vc_column][vc_column width=”1\/4″][\/vc_column][vc_column width=”1\/4″][\/vc_column][vc_column width=”1\/4″][vc_column_text] HSLS MolBio Licensed Tools: Resource Menu HSLS MolBio Licensed Tools[\/vc_column_text][\/vc_column][\/vc_row][vc_column width=”1\/6″][\/vc_column]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-microsite.php","meta":{"footnotes":""},"class_list":["post-1019","page","type-page","status-publish","hentry","description-off"],"aioseo_notices":[],"_links":{"self":[{"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/pages\/1019","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/comments?post=1019"}],"version-history":[{"count":0,"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/pages\/1019\/revisions"}],"wp:attachment":[{"href":"https:\/\/rcm1.rcm.upr.edu\/bioinformaticshealth\/wp-json\/wp\/v2\/media?parent=1019"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}